Gurung, Arun Bahadur; Ali, Mohammad Ajmal; Lee, Joongku; Abul Farah, Mohammad; Al-Anazi, Khalid Mashay published the artcile< Unravelling lead antiviral phytochemicals for the inhibition of SARS-CoV-2 Mpro enzyme through in silico approach>, Quality Control of 6882-68-4, the main research area is COVID 19 coronavirus protease inhibition phytochem; Antiviral properties; Binding affinity; COVID-19; Medicinal plants; Molecular docking; Phytochemicals; SARS-CoV-2; SARS-CoV-2 M(pro).
A new SARS coronavirus (SARS-CoV-2) belonging to the genus Betacoronavirus has caused a pandemic known as COVID-19. Among coronaviruses, the main protease (Mpro) is an essential drug target which, along with papain-like proteases catalyzes the processing of polyproteins translated from viral RNA and recognizes specific cleavage sites. There are no human proteases with similar cleavage specificity and therefore, inhibitors are highly likely to be nontoxic. Therefore, targeting the SARS-CoV-2 Mpro enzyme with small mols. can block viral replication. The present study is aimed at the identification of promising lead mols. for SARS-CoV-2 Mpro enzyme through virtual screening of antiviral compounds from plants. The binding affinity of selected small drug-like mols. to SARS-CoV-2 Mpro, SARS-CoV Mpro, and MERS-CoV Mpro were studied using mol. docking. Bonducellpin D was identified as the best lead mol. which shows higher binding affinity (-9.28 kcal/mol) as compared to the control (-8.24 kcal/mol). The mol. binding was stabilized through 4 hydrogen bonds with Glu166 and Thr190 as well as hydrophobic interactions via 8 residues. The SARS-CoV-2 Mpro shows identities of 96.08% and 50.65% to that of SARS-CoV Mpro and MERS-CoV Mpro resp. at the sequence level. At the structural level, the root mean square deviation (RMSD) between SARS-CoV-2 Mpro and SARS-CoV Mpro was found to be 0.517 Å and 0.817 Å between SARS-CoV-2 Mpro and MERS-CoV Mpro. Bonducellpin D exhibited broad-spectrum inhibition potential against SARS-CoV Mpro and MERS-CoV Mpro and therefore is a promising drug candidate, which needs further validations through in vitro and in vivo studies.
Life Sciences published new progress about Antiviral agents. 6882-68-4 belongs to class naphthyridine, and the molecular formula is C15H24N2O, Quality Control of 6882-68-4.
Referemce:
1,8-Naphthyridine – Wikipedia,
1,8-Naphthyridine | C8H6N2 – PubChem